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Amplifying Single X Chromosome Gene Expression |
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SciMed - Genetics & Genome | |
TS-Si News Service | |
Friday, 04 March 2011 15:00 | |
![]() ![]() ![]() Standard sexual dimorphism is defined by the fact that females have two X chromosomes in their genomes while males have both an X and a Y. However, this is a life-threatening genetic imbalance. Cells in mammals cells work to upregulate (emphasize) the lone X- ![]() The research team had a head start on understanding this process. Scientists already suspected that X-chromosome upregulation had a lot to do with the MSL protein complex that binds to the X-chromosome. The MSL is male-specific lethal because the mutant form would prove deadly. What scientists didn't know was how it worked. RNA polymerase II (also RNAP II / Pol II) is an enzyme found in eukaryotic cells. It catalyzes the process of creating a complementary RNA copy of a DNA sequence ( ![]() For RNAP II, the initiation of transcription requires a wide range of factors that bind it to its promoters. Certain genes (estrogen response elements) can be can be expressed when activated estrogen receptors bind to them. Estrogen increases polymerase activity in ![]() ![]() The effects of the X chromosome on brain activity are enhanced, particularly for those subjects that contain high affinity estrogen receptors.It is difficult to double the levels of expression of a wide variety of genes on one specific chromosome. However, it turns out that MSL increases gene expression on the X chromosome by openng the DNA double helix more frequently. In the language of X-chromosome upregulators (aka males), it is a specialized regulator targeted for the X-chromosome. Erica Larschan is Assistant Professor of Biology at Brown University. She wanted to know how males so freely express the genes on their X-chromosomes when she was a postdoctoral scholar in the lab of Mitzi Kuroda at the Harvard Medical School and Brigham and Women's Hospital. To figure out the process process now described in the journal Nature, she performed experiments using the fruitfly model, in collaboration with Eric Bishop, a graduate student at Harvard and Boston University. It turns out that the RNA polymerase II enzyme converts DNA instructions into RNA code to express genes. Larschan and her colleagues discovered the male-specific specialization by using global run-on sequencing to measure how much of the enzyme was active in the X chromosome. They found that to a point all chromosomes have the same amount of the enzyme. After that — farther along each gene — the X chromosome has noticeably more than other chromosomes. In other words, something allows more RNA polymerase II to move farther along the X chromosome genes, past the point where those enzymes diminish on other chromosomes. The team showed that it was MSL by interfering with the MSL complex. By doing that, no greater amount of RNA polymerase persisted along the X-chromosome genes than along any other genes in the genome. Without MSL, the enzyme had lost its ability to push farther. The finding that the regulation of gene expression occurs farther along genes on the X-chromosome is new, as is the discovery that MSL is promoting it, Larschan said. "People had thought for a long time that most of the regulation was happening at the beginning of a gene, so this is a new step that people are just starting to think about, which is regulating the entry of polymerase into the rest of the gene," she said. "MSL is what's promoting this entry into the gene bodies." FundingFunding for the X-chromosome research came from the National Institutes of Health (NIH) and a Charles A. King Trust fellowship from the Medical Foundation of Health Resources in Action (HRIA).
ParticipationIn addition to Larschan, Bishop and Kuroda, other key authors are Peter Park and Peter Kharchenko of the Harvard Medical School and Children's Hospital Boston, and Leighton Core and John Lis of Cornell University.
Five of these authors (Kharchenko, Park, Kuroda, Larschan and Bishop) are also authors on a recent paper in Nature providing other fundamental insights into the mechanism of gene expression: Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. [ link ] CitationX chromosome dosage compensation via enhanced transcriptional elongation in Drosophila. Erica Larschan, Eric P. Bishop, Peter V. Kharchenko, Leighton J. Core, John T. Lis, Peter J. Park, Mitzi I. Kuroda. Nature 471; 115-118. doi:10.1038/nature09757
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Last Updated on Friday, 04 March 2011 10:36 |