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Chad A. Mirkin, Northwestern University, George B. Rathmann Professor of Chemistry in the Weinberg College of Arts and Sciences. Photo by Bill Arsenault. 

DNA Blueprints Guide The Construction Of Specific Human Structures

Chad Mirkin discusses using DNA to build a three-dimensional structure out of gold, likening the process to building a house. Starting with basic materials such as bricks, wood, siding, stone and shingles, a construction team can build many different types of houses out of the same building blocks.
 
The article includes an audio recording of the full interview. Photo courtesy of the UCSD School of Medicine.
Proliferating Cells Can Evade microRNA Control Print E-mail
Science - Biological Sciences
TS-Si News Service   
Sunday, 17 August 2008 16:30
Cell regulation is a race against the biological clock.
A microRNA (miRNA) is a single-stranded RNA molecule (~21–23 nucleotides). miRNAs downregulate gene expression, the process in which the inheritable information of a gene (the DNA sequence) transforms into a functional product, such as a protein or RNA.
 
miRNAs are encoded by genes that are transcribed from DNA, but not translated into protein (non-coding RNA). They are processed in a sequence from primary transcripts known as pri-miRNA, to short stem-loop structures called precursor microRNA (pre-miRNA), and finally to functional miRNA.
 
MiRNA Processing
 
The microRNAs target and inactivate particular sets of messenger RNAs. Ths prevents the RNAs from producing protein and effectively silencing the group of genes from which they were transcribed.
 
Scientists found that miRNAs influence the differentiation of pluripotent embryonic stem (ES) cells into such things as cardiac muscle and even whole organs.
 

 
Image adapted by Narayanese from source data in Oncomirs — microRNAs with a role in cancer. Esquela-Kerscher A, Slack FJ. Nature Reviews Cancer 6: 259–69. doi:10.1038 / nrc1840.
Cambridge, MA, USA. New research findings have important implications for human cell types and tissues, including the brain, liver, and lung. While studying cell division, biologists discovered that proliferating cells can shift the output of their genes to evade regulation by microRNAs, the tiny molecules that normally regulate gene expression.
 
Stem cells have the capacity to divide for long periods of time even when most of the other cells are quiescent. A critical question for developmental biology is how they escape cell division stop signals. The new work extends accumulating evidence for this phenomenon and helps explain how some cells avoid regulatory controls during rapid division.
 

Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge. Science 320, 1643-7.

 
The researchers studied T lymphocytes, a type of immune cell. Normal T cells start dividing rapidly when they encounter their target antigen (for example, a specific bacterium or virus). Their findings appear in Science.
 
Chris Burge, associate professor of biology and biological engineering at MIT.

The research team was led by Chris Burge, associate professor of biology and biological engineering at MIT, in collaboration with the lab of Institute Professor Phillip Sharp. [N1-2]

 
Burge and his colleagues found that when T cells begin dividing, they start producing a shorter version of messenger RNA (mRNA), which carries protein-building instructions transcribed from DNA.
 
The shorter mRNA is missing about half of a section called the 3' untranslated region (UTR), which does not code for proteins, but contain binding sites for many microRNAs. When those binding sites are missing, the cell is able to escape control by the microRNAs, which generally function to suppress growth.
 
"When cells proliferate, they change their mRNA in a way that reduces the impact of microRNA regulation," Burge explained. For normal T cells, that response is desirable; however, in cancerous cells it may not be.
 
Since microRNAs were identified in mammals several years ago, much work has been done on how over- or underexpression of microRNA affects cell proliferation. There have been significant observations of the same effect in many other human cell types and tissues. The most notable types are those for the brain, liver, and lung. Work continues to determine whether this is a predominant or even ubiquitous pattern in human developmental biology.
 
Learning more about how mRNAs evade microRNA control could help researchers develop ways to control the mRNA switch from the long form to the short form, so the mRNA remains susceptible to microRNA control, Burge said.
 
The findings could also aid design of small RNA therapeutics, by focusing on targeting those UTR regions that remain unchanged when cells proliferate.
 
The Christopher Burge Laboratory uses computational and experimental approaches to study mechanisms of gene expression and regulation, developing algorithms for gene  identification and other genomic applications.
 
Burge says "A unifying goal of our research is to understand the rules of RNA splicing specificity: how the precise locations of introns and splice sites are identified in primary transcripts."
 


[N1] The research was funded by the Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation), the Cancer Research Institute, the Gina De Felice and Robert M. Lefkowitz Fund, the US Public Health Service (PHS), the US National Cancer Institute and the National Human Genome Research Institute (NHGRI).

[N2] Lead authors of the paper are Rickard Sandberg, a postdoctoral fellow in the Department of Biology, now at the Karolinska Institute in Sweden, and Joel Neilson, research scientist at MIT's David H. Koch Institute for Integrative Cancer Research. Other authors of the paper are MIT undergraduate Arup Sarma and Professor Sharp, Nobel laureate.

 


Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites. Rickard Sandberg, Joel R. Neilson, Arup Sarma, Phillip A. Sharp, Christopher B. Burge. Science 320, 1643-7.

Abstract

Messenger RNA (mRNA) stability, localization, and translation are largely determined by sequences in the 3' untranslated region (3'UTR). We found a conserved increase in expression of mRNAs terminating at upstream polyadenylation sites after activation of primary murine CD4+ T lymphocytes. This program, resulting in shorter 3'UTRs, is a characteristic of gene expression during immune cell activation and correlates with proliferation across diverse cell types and tissues. Forced expression of full-length 3'UTRs conferred reduced protein expression. In some cases the reduction in protein expression could be reversed by deletion of predicted microRNA target sites in the variably included region. Our data indicate that gene expression is coordinately regulated, such that states of increased proliferation are associated with widespread reductions in the 3'UTR-based regulatory capacity of mRNAs.

 
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Last Updated on Monday, 18 August 2008 01:35